MRIQC: individual T1w report

Summary

Subject ID: 020_ControlPre.
Date and time: 2018-05-06, 20:50.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.24972415046729027
cnr			4.995332472478641
efc			0.5677361144951352
fber			105.6996841430664
fwhm	avg		3.69961
fwhm	x		3.54661
fwhm	y		3.93786
fwhm	z		3.61436
icvs	csf		0.15913476829332704
icvs	gm		0.5134462169510722
icvs	wm		0.3274190147556008
inu	med		1.092482566833496
inu	range		0.3259128987789155
qi	1		0.0
qi	2		0.000664616122816759
rpve	csf		33.83828015202629
rpve	gm		12.63328756991934
rpve	wm		20.860744915287423
size	x		180
size	y		256
size	z		256
snr	csf		2.036789829884126
snr	gm		10.98047721776065
snr	total		9.748623196090946
snr	wm		16.228602540628064
snrd	csf		12.713122985590102
snrd	gm		28.790904278370643
snrd	total		30.186048127108283
snrd	wm		49.05411711736411
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6777492595987575
summary	bg	mad	13.355525970458984
summary	bg	mean	50.75455093383789
summary	bg	median	49.82073211669922
summary	bg	n	3063004.0
summary	bg	p05	30.72521238327026
summary	bg	p95	74.2076587677002
summary	bg	stdv	13.571340560913086
summary	csf	k	0.05535881155114408
summary	csf	mad	146.01426696777344
summary	csf	mean	277.17547607421875
summary	csf	median	259.1680908203125
summary	csf	n	9087.0
summary	csf	p05	106.7512435913086
summary	csf	p95	493.797619628906
summary	csf	stdv	127.23641204833984
summary	gm	k	0.3324827085060762
summary	gm	mad	51.15375900268555
summary	gm	mean	588.77880859375
summary	gm	median	586.9276733398438
summary	gm	n	55555.0
summary	gm	p05	503.5295989990234
summary	gm	p95	679.2027770996094
summary	gm	stdv	53.451446533203125
summary	wm	k	0.5951047237539102
summary	wm	mad	52.00310516357422
summary	wm	mean	990.2911987304688
summary	wm	median	1000.0109252929688
summary	wm	n	155478.0
summary	wm	p05	869.1825225830078
summary	wm	p95	1076.2530151367187
summary	wm	stdv	61.62007522583008
tpm	overlap	csf	0.21521104872226715
tpm	overlap	gm	0.5511982440948486
tpm	overlap	wm	0.5416935086250305
wm2max			0.6261076928400167

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	c24b53095c60bf484d4db17b175c026f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.