MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.24972415046729027
cnr4.995332472478641
efc0.5677361144951352
fber105.6996841430664
fwhmavg3.69961
fwhmx3.54661
fwhmy3.93786
fwhmz3.61436
icvscsf0.15913476829332704
icvsgm0.5134462169510722
icvswm0.3274190147556008
inumed1.092482566833496
inurange0.3259128987789155
qi10.0
qi20.000664616122816759
rpvecsf33.83828015202629
rpvegm12.63328756991934
rpvewm20.860744915287423
sizex180
sizey256
sizez256
snrcsf2.036789829884126
snrgm10.98047721776065
snrtotal9.748623196090946
snrwm16.228602540628064
snrdcsf12.713122985590102
snrdgm28.790904278370643
snrdtotal30.186048127108283
snrdwm49.05411711736411
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6777492595987575
summarybgmad13.355525970458984
summarybgmean50.75455093383789
summarybgmedian49.82073211669922
summarybgn3063004.0
summarybgp0530.72521238327026
summarybgp9574.2076587677002
summarybgstdv13.571340560913086
summarycsfk0.05535881155114408
summarycsfmad146.01426696777344
summarycsfmean277.17547607421875
summarycsfmedian259.1680908203125
summarycsfn9087.0
summarycsfp05106.7512435913086
summarycsfp95493.797619628906
summarycsfstdv127.23641204833984
summarygmk0.3324827085060762
summarygmmad51.15375900268555
summarygmmean588.77880859375
summarygmmedian586.9276733398438
summarygmn55555.0
summarygmp05503.5295989990234
summarygmp95679.2027770996094
summarygmstdv53.451446533203125
summarywmk0.5951047237539102
summarywmmad52.00310516357422
summarywmmean990.2911987304688
summarywmmedian1000.0109252929688
summarywmn155478.0
summarywmp05869.1825225830078
summarywmp951076.2530151367187
summarywmstdv61.62007522583008
tpmoverlapcsf0.21521104872226715
tpmoverlapgm0.5511982440948486
tpmoverlapwm0.5416935086250305
wm2max0.6261076928400167

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumc24b53095c60bf484d4db17b175c026f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.